MolNFT v1 · #79198 · protein
Crystal structure of the CDK2 in complex with thiazolylpyrimidine inhibitor
3SW7 · Cyclin-dependent kinase 2: “Crystal structure of the CDK2 in complex with thiazolylpyrimidine inhibitor”. X-ray diffraction, 2 ligands (ACE, 19K), 1 pocket (best druggability 0.69). MolNFT v1 #79198 on GenesisL1: 3D structure…
- PDB
- 3SW7
- Type
- protein
- Length
- 278 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Cyclin-dependent kinase 2
- EC
- 2.7.11.22
- UniProt
- P24941
- Ligands
- ACE, 19K
- Pockets
- 1 · best druggability 0.69
Structure
x-ray diffraction · 1 distinct chain · 35% helix, 17% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Cyclin-dependent kinase 2 (EC 2.7.11.22) | protein | 278 | 35% helix, 17% strand | P24941 |
Ligands and binding sites
- ACE · Acetyl group · ligand · chains A
- 19K · N~4~-[4-(2,4-dimethyl-1,3-thiazol-5-yl)pyrimidin-2-yl]-N~1~,N~1~-dimethyl-2-nitrobenzene-1,4-diamine · ligand · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 400 | 0.69 | 0.81 | 54 | 19K |
Modifications
Observed in the structure: 1 covalent (covalent ligand).
Compared structures
- 3SW7 · Crystal Structure of the CDK2 in complex with thiazolylpyrimidine inhibitor · the same entry in another collection · chain A against A, TM-score 1.00
- P24941 · AlphaFold monomer V2.0 prediction for cyclin-dependent kinase 2 (P24941) · a predicted model of the same protein · chain A against A, TM-score 0.95
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P24941
- Elsewhere: RCSB PDB 3SW7 · PDBe 3SW7 · UniProt P24941
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