MolNFT v1 · #74075 · protein

Crystal structure of B. megaterium levansucrase mutant D257A

3OM2: “Crystal structure of B. megaterium levansucrase mutant D257A”. X-ray diffraction, 2 ligands (MG, CA), 1 pocket (best druggability 0.60). MolNFT v1 #74075 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 3OM2
Type: protein
Length: 448 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Levansucrase
EC: 2.4.1.10
UniProt: D5DC07
Ligands: MG, CA
Pockets: 1 · best druggability 0.60

Structure

x-ray diffraction · 1 distinct chain · 15% helix, 41% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Levansucrase (EC 2.4.1.10)	protein	448	15% helix, 41% strand	D5DC07

Ligands and binding sites

MG · Magnesium ion · metal · 2 copies · chains A
CA · Calcium ion · metal · chains A
CIT · Citric acid · additive · 2 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	350	0.60	0.77	43	empty

Compared structures

3OM2 · Crystal structure of B. megaterium levansucrase mutant D257A · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt D5DC07
Elsewhere: RCSB PDB 3OM2 · PDBe 3OM2 · UniProt D5DC07

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