MolNFT v1 · #73747 · protein
X-ray crystal structure of protein SP_0782 (7-79) from streptococcus pneumoniae. northeast structural genomics consortium target SPR104
3OBH · Uncharacterized protein: “X-ray crystal structure of protein SP_0782 (7-79) from streptococcus pneumoniae. northeast structural…”. X-ray diffraction, 1 pocket (best druggability 0.29). MolNFT v1 #73747 on GenesisL1: 3D structure…
- PDB
- 3OBH
- Type
- protein
- Length
- 133 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Uncharacterized protein
- UniProt
- Q97RM2
- Pockets
- 1 · best druggability 0.29
Structure
x-ray diffraction · 2 distinct chains · 16% helix, 53% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Uncharacterized protein | protein | 66 | 17% helix, 53% strand | Q97RM2 |
| B | Uncharacterized protein | protein | 67 | 15% helix, 52% strand | Q97RM2 |
Ligands and binding sites
- ACY · Acetic acid · additive · 2 copies · chains A, B
- PEG · Di(hydroxyethyl)ether · additive · 2 copies · chains A, B
- CIT · Citric acid · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 57 | 0.29 | 0.74 | 9 | PEG |
Interfaces
1 interface between chains.
- A–B · 901 Ų buried · 5 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 4 modified (engineered).
Compared structures
- 3OBH · X-ray crystal structure of protein SP_0782 (7-79) from Streptococcus pneumoniae.… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q97RM2
- Elsewhere: RCSB PDB 3OBH · PDBe 3OBH · UniProt Q97RM2
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