MolNFT v1 · #7168 · protein
Crystal structure of erythrina corallodendron lectin in hexagonal crystal form
1FYU: “Crystal structure of erythrina corallodendron lectin in hexagonal crystal form”. X-ray diffraction, 4 ligands (GLC, GAL, MN), 1 pocket (best druggability 0.31). MolNFT v1 #7168 on GenesisL1: 3D structure, binding sites and pockets…
- PDB
- 1FYU
- Type
- protein
- Length
- 478 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Lectin
- UniProt
- P16404
- Ligands
- GLC, GAL, MN, CA
- Pockets
- 1 · best druggability 0.31
Structure
x-ray diffraction · 1 distinct chain · 4% helix, 46% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Lectin | protein | 239 | 4% helix, 46% strand | P16404 |
Ligands and binding sites
- GLC · alpha-D-glucopyranose · sugar · 2 copies · chains A, B
- GAL · beta-D-galactopyranose · sugar · 2 copies · chains A, B
- MN · Manganese (II) ion · metal · 2 copies · chains A, B
- CA · Calcium ion · metal · 2 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 52 | 0.31 | 0.77 | 15 | empty |
Interfaces
1 interface between chains.
- A–B · 846 Ų buried · 10 hydrogen bonds · protein-protein
Compared structures
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P16404
- Elsewhere: RCSB PDB 1FYU · PDBe 1FYU · UniProt P16404
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