MolNFT v1 · #71581 · protein
Oxidized (CU2+) peptidylglycine alpha-hydroxylating monooxygenase (phm) with bound carbon monooxide (co)
3MIF · Peptidyl-glycine alpha-amidating monooxygenase: “Oxidized (CU2+) peptidylglycine alpha-hydroxylating monooxygenase (phm) with bound carbon monooxide (co)”. X-ray diffraction, 3 ligands (CU, NI, CMO), 2 pockets (best druggability…
- PDB
- 3MIF
- Type
- protein
- Length
- 310 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Peptidyl-glycine alpha-amidating monooxygenase
- EC
- 1.14.17.3
- UniProt
- P14925
- Ligands
- CU, NI, CMO
- Pockets
- 2 · best druggability 0.67
Structure
x-ray diffraction · 1 distinct chain · 6% helix, 49% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Peptidyl-glycine alpha-amidating monooxygenase (EC 1.14.17.3) | protein | 310 | 6% helix, 49% strand | P14925 |
Ligands and binding sites
- CU · Copper (II) ion · metal · 2 copies · chains A
- NI · Nickel (II) ion · metal · chains A
- CMO · Carbon monoxide · ion · chains A
- GOL · Glycerol · additive · 4 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 439 | 0.67 | 0.79 | 57 | GOL |
| 2 | 84 | 0.57 | 0.86 | 20 | GOL |
Modifications
Observed in the structure: 5 disulfide (disulfide).
Compared structures
- 3MIF · Oxidized (Cu2+) peptidylglycine alpha-hydroxylating monooxygenase (PHM) with bound carbon… · the same entry in another collection · chain A against A, TM-score 1.00
- P14925 · AlphaFold monomer V2.0 prediction for peptidylglycine alpha-amidating monooxygenase… · a predicted model of the same protein · chain A against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P14925
- Elsewhere: RCSB PDB 3MIF · PDBe 3MIF · UniProt P14925
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