MolNFT v1 · #69821 · protein
Crystal structure of gmhb from E. COLI in complex with calcium and phosphate.
3L1V · D,D-heptose 1,7-bisphosphate phosphatase: “Crystal structure of gmhb from E. COLI in complex with calcium and phosphate.”. X-ray diffraction, 3 ligands (ZN, CA, PO4), 2 pockets (best druggability 0.50). MolNFT v1 #69821 on…
- PDB
- 3L1V
- Type
- protein
- Length
- 364 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- D,D-heptose 1,7-bisphosphate phosphatase
- EC
- 3.1.3.-
- UniProt
- P63228
- Ligands
- ZN, CA, PO4
- Pockets
- 2 · best druggability 0.50
Structure
x-ray diffraction · 1 distinct chain · 40% helix, 19% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | D,D-heptose 1,7-bisphosphate phosphatase (EC 3.1.3.-) | protein | 182 | 40% helix, 19% strand | P63228 |
Ligands and binding sites
- ZN · Zinc ion · metal · 2 copies · chains A, B
- CA · Calcium ion · metal · 2 copies · chains A, B
- PO4 · Phosphate ion · ion · 2 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 120 | 0.50 | 0.81 | 20 | CA, PO4 |
| 2 | 97 | 0.48 | 0.82 | 19 | CA, PO4 |
Compared structures
- 3L1V · Crystal structure of GmhB from E. coli in complex with calcium and phosphate. · the same entry in another collection · chain A against A, TM-score 1.00
- P63228 · AlphaFold monomer V2.0 prediction for D-glycero-beta-D-manno- heptose-1,7-bisphosphate… · a predicted model of the same protein · chain A against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P63228
- Elsewhere: RCSB PDB 3L1V · PDBe 3L1V · UniProt P63228
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.