Research workbench
Crystal structure of gmhb from E. COLI in complex with calcium and phosphate.
Analyse Crystal structure of gmhb from E. COLI in complex with calcium and phosphate. in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3L1V
- Type
- protein
- Length
- 364 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- D,D-heptose 1,7-bisphosphate phosphatase
- EC
- 3.1.3.-
- UniProt
- P63228
- Ligands
- ZN, CA, PO4
- Pockets
- 2 · best druggability 0.50
Structure
x-ray diffraction · 1 distinct chain · 40% helix, 19% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | D,D-heptose 1,7-bisphosphate phosphatase (EC 3.1.3.-) | protein | 182 | 40% helix, 19% strand | P63228 |
Ligands and binding sites
- ZN · Zinc ion · metal · 2 copies · chains A, B
- CA · Calcium ion · metal · 2 copies · chains A, B
- PO4 · Phosphate ion · ion · 2 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 120 | 0.50 | 0.81 | 20 | CA, PO4 |
| 2 | 97 | 0.48 | 0.82 | 19 | CA, PO4 |
Compared structures
- 3L1V · Crystal structure of GmhB from E. coli in complex with calcium and phosphate. · the same entry in another collection · chain A against A, TM-score 1.00
- P63228 · AlphaFold monomer V2.0 prediction for D-glycero-beta-D-manno- heptose-1,7-bisphosphate… · a predicted model of the same protein · chain A against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P63228
- Elsewhere: RCSB PDB 3L1V · PDBe 3L1V · UniProt P63228
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