MolNFT v1 · #69275 · protein
Crystal structure of lactobacillus reuteri N-terminally truncated glucansucrase GTF180 in triclinic apo- form
3KLK: “Crystal structure of lactobacillus reuteri N-terminally truncated glucansucrase GTF180 in triclinic apo- form”. X-ray diffraction, 1 ligand (CA), 7 pockets (best druggability 0.61). MolNFT v1 #69275 on GenesisL1: 3D structure…
- PDB
- 3KLK
- Type
- protein
- Length
- 1,006 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Glucansucrase
- EC
- 2.4.1.5
- UniProt
- Q5SBN3
- Ligands
- CA
- Pockets
- 7 · best druggability 0.61
Structure
x-ray diffraction · 1 distinct chain · 25% helix, 22% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Glucansucrase (EC 2.4.1.5) | protein | 1006 | 25% helix, 22% strand | Q5SBN3 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
7 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 403 | 0.61 | 0.77 | 58 | GOL |
| 2 | 283 | 0.57 | 0.77 | 36 | empty |
| 3 | 88 | 0.40 | 0.77 | 18 | empty |
| 4 | 81 | 0.38 | 0.77 | 22 | empty |
| 5 | 83 | 0.32 | 0.74 | 13 | empty |
Compared structures
- 3KLK · Crystal structure of Lactobacillus reuteri N-terminally truncated glucansucrase GTF180 in… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q5SBN3
- Elsewhere: RCSB PDB 3KLK · PDBe 3KLK · UniProt Q5SBN3
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