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Crystal structure of lactobacillus reuteri N-terminally truncated glucansucrase GTF180 in triclinic apo- form

Analyse Crystal structure of lactobacillus reuteri N-terminally truncated glucansucrase… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 3KLK
Type: protein
Length: 1,006 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Glucansucrase
EC: 2.4.1.5
UniProt: Q5SBN3
Ligands: CA
Pockets: 7 · best druggability 0.61

Structure

x-ray diffraction · 1 distinct chain · 25% helix, 22% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Glucansucrase (EC 2.4.1.5)	protein	1006	25% helix, 22% strand	Q5SBN3

Ligands and binding sites

CA · Calcium ion · metal · chains A
GOL · Glycerol · additive · 8 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

7 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	403	0.61	0.77	58	GOL
2	283	0.57	0.77	36	empty
3	88	0.40	0.77	18	empty
4	81	0.38	0.77	22	empty
5	83	0.32	0.74	13	empty

Compared structures

3KLK · Crystal structure of Lactobacillus reuteri N-terminally truncated glucansucrase GTF180 in… · the same entry in another collection · chain A against A, TM-score 1.00

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Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q5SBN3
Elsewhere: RCSB PDB 3KLK · PDBe 3KLK · UniProt Q5SBN3

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