MolNFT v1 · #63998 · protein
Crystal structure of the mouse DOM3Z in complex with GDP
3FQJ · Protein DOM3Z: “Crystal structure of the mouse DOM3Z in complex with GDP”. X-ray diffraction, 2 ligands (GDP, MG), 3 pockets (best druggability 0.80). MolNFT v1 #63998 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 3FQJ
- Type
- protein
- Length
- 353 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Protein DOM3Z
- UniProt
- O70348
- Ligands
- GDP, MG
- Pockets
- 3 · best druggability 0.80
Structure
x-ray diffraction · 1 distinct chain · 29% helix, 28% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Protein DOM3Z | protein | 353 | 29% helix, 28% strand | O70348 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 932 | 0.80 | 0.82 | 81 | MG, GDP |
| 2 | 81 | 0.33 | 0.74 | 21 | empty |
| 3 | 55 | 0.32 | 0.76 | 13 | empty |
Compared structures
- 3FQJ · Crystal Structure of the Mouse Dom3Z in Complex with GDP · the same entry in another collection · chain A against A, TM-score 1.00
- O70348 · AlphaFold monomer V2.0 prediction for decapping and exoribonuclease protein (O70348) · a predicted model of the same protein · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt O70348
- Elsewhere: RCSB PDB 3FQJ · PDBe 3FQJ · UniProt O70348
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