MolNFT v1 · #61790 · protein

Proteinase K by classical hanging drop method before high X ray dose on esrf id 14-2 beamline

3DW3: “Proteinase K by classical hanging drop method before high X ray dose on esrf id 14-2 beamline”. X-ray diffraction, 1 ligand (CA), 1 pocket (best druggability 0.35). MolNFT v1 #61790 on GenesisL1: 3D structure, binding sites and…

PDB: 3DW3
Type: protein
Length: 279 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Proteinase K
EC: 3.4.21.64
UniProt: P06873
Ligands: CA
Pockets: 1 · best druggability 0.35

Structure

x-ray diffraction · 1 distinct chain · 27% helix, 24% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
X	Proteinase K (EC 3.4.21.64)	protein	279	27% helix, 24% strand	P06873

Ligands and binding sites

CA · Calcium ion · metal · chains X

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	80	0.35	0.76	22	empty

Modifications

Observed in the structure: 2 disulfide (disulfide).

Compared structures

3DW3 · Proteinase K by Classical hanging drop method before high X Ray dose on ESRF ID 14-2… · the same entry in another collection · chain X against X, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P06873
Elsewhere: RCSB PDB 3DW3 · PDBe 3DW3 · UniProt P06873

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