MolNFT v1 · #59866 · protein
D7 symmetrized structure of unliganded groel at 4.2 ångström resolution by cryoem
3CAU · 60 kda chaperonin: “D7 symmetrized structure of unliganded groel at 4.2 ångström resolution by cryoem”. Electron microscopy, 18 pockets (best druggability 0.56). MolNFT v1 #59866 on GenesisL1: 3D structure, binding sites and pockets…
- PDB
- 3CAU
- Type
- protein
- Length
- 7,364 residues
- Chains
- 14
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- 60 kda chaperonin
- UniProt
- P0A6F5
- Pockets
- 18 · best druggability 0.56
Structure
electron microscopy · 1 distinct chain · 0% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, C, D, E, F, G, H, I, J, K, L, M, N | 60 kda chaperonin | protein | 526 | 0% helix, 0% strand | P0A6F5 |
Pockets
18 pockets found on a 1 Å grid, 12 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 335 | 0.56 | 0.73 | 57 | empty |
| 2 | 336 | 0.55 | 0.73 | 65 | empty |
| 3 | 299 | 0.53 | 0.73 | 60 | empty |
| 4 | 302 | 0.53 | 0.73 | 60 | empty |
| 5 | 293 | 0.53 | 0.73 | 55 | empty |
Interfaces
19 interfaces between chains.
- H–I · 197 Ų buried · 0 hydrogen bonds · protein-protein
- F–G · 195 Ų buried · 0 hydrogen bonds · protein-protein
- J–K · 195 Ų buried · 0 hydrogen bonds · protein-protein
- M–N · 194 Ų buried · 0 hydrogen bonds · protein-protein
- C–D · 193 Ų buried · 0 hydrogen bonds · protein-protein
Compared structures
- 3CAU · D7 symmetrized structure of unliganded GroEL at 4.2 Angstrom resolution by cryoEM · the same entry in another collection · chain K against K, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P0A6F5
- Elsewhere: RCSB PDB 3CAU · PDBe 3CAU · UniProt P0A6F5
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