Research workbench
D7 symmetrized structure of unliganded groel at 4.2 ångström resolution by cryoem
Analyse D7 symmetrized structure of unliganded groel at 4.2 ångström resolution by… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3CAU
- Type
- protein
- Length
- 7,364 residues
- Chains
- 14
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- 60 kda chaperonin
- UniProt
- P0A6F5
- Pockets
- 18 · best druggability 0.56
Structure
electron microscopy · 1 distinct chain · 0% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, C, D, E, F, G, H, I, J, K, L, M, N | 60 kda chaperonin | protein | 526 | 0% helix, 0% strand | P0A6F5 |
Pockets
18 pockets found on a 1 Å grid, 12 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 335 | 0.56 | 0.73 | 57 | empty |
| 2 | 336 | 0.55 | 0.73 | 65 | empty |
| 3 | 299 | 0.53 | 0.73 | 60 | empty |
| 4 | 302 | 0.53 | 0.73 | 60 | empty |
| 5 | 293 | 0.53 | 0.73 | 55 | empty |
Interfaces
19 interfaces between chains.
- H–I · 197 Ų buried · 0 hydrogen bonds · protein-protein
- F–G · 195 Ų buried · 0 hydrogen bonds · protein-protein
- J–K · 195 Ų buried · 0 hydrogen bonds · protein-protein
- M–N · 194 Ų buried · 0 hydrogen bonds · protein-protein
- C–D · 193 Ų buried · 0 hydrogen bonds · protein-protein
Compared structures
- 3CAU · D7 symmetrized structure of unliganded GroEL at 4.2 Angstrom resolution by cryoEM · the same entry in another collection · chain K against K, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P0A6F5
- Elsewhere: RCSB PDB 3CAU · PDBe 3CAU · UniProt P0A6F5
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