MolNFT v1 · #59834 · protein
C7 symmetrized structure of unliganded groel at 4.7 ångström resolution from cryoem
3C9V · 60 kda chaperonin: “C7 symmetrized structure of unliganded groel at 4.7 ångström resolution from cryoem”. Electron microscopy, 19 pockets (best druggability 0.51). MolNFT v1 #59834 on GenesisL1: 3D structure, binding sites and…
- PDB
- 3C9V
- Type
- protein
- Length
- 7,364 residues
- Chains
- 14
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- 60 kda chaperonin
- UniProt
- P0A6F5
- Pockets
- 19 · best druggability 0.51
Structure
electron microscopy · 1 distinct chain · 0% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, C, D, E, F, G, H, I, J, K, L, M, N | 60 kda chaperonin | protein | 526 | 0% helix, 0% strand | P0A6F5 |
Pockets
19 pockets found on a 1 Å grid, 5 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 254 | 0.51 | 0.73 | 57 | empty |
| 2 | 249 | 0.51 | 0.73 | 50 | empty |
| 3 | 256 | 0.51 | 0.73 | 61 | empty |
| 4 | 237 | 0.51 | 0.73 | 50 | empty |
| 5 | 239 | 0.51 | 0.73 | 51 | empty |
Interfaces
14 interfaces between chains.
- L–M · 271 Ų buried · 0 hydrogen bonds · protein-protein
- H–N · 270 Ų buried · 0 hydrogen bonds · protein-protein
- M–N · 269 Ų buried · 0 hydrogen bonds · protein-protein
- H–I · 269 Ų buried · 0 hydrogen bonds · protein-protein
- K–L · 268 Ų buried · 0 hydrogen bonds · protein-protein
Compared structures
- 3C9V · C7 Symmetrized Structure of Unliganded GroEL at 4.7 Angstrom Resolution from CryoEM · the same entry in another collection · chain E against E, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P0A6F5
- Elsewhere: RCSB PDB 3C9V · PDBe 3C9V · UniProt P0A6F5
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