Research workbench
C7 symmetrized structure of unliganded groel at 4.7 ångström resolution from cryoem
Analyse C7 symmetrized structure of unliganded groel at 4.7 ångström resolution from… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3C9V
- Type
- protein
- Length
- 7,364 residues
- Chains
- 14
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- 60 kda chaperonin
- UniProt
- P0A6F5
- Pockets
- 19 · best druggability 0.51
Structure
electron microscopy · 1 distinct chain · 0% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, C, D, E, F, G, H, I, J, K, L, M, N | 60 kda chaperonin | protein | 526 | 0% helix, 0% strand | P0A6F5 |
Pockets
19 pockets found on a 1 Å grid, 5 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 254 | 0.51 | 0.73 | 57 | empty |
| 2 | 249 | 0.51 | 0.73 | 50 | empty |
| 3 | 256 | 0.51 | 0.73 | 61 | empty |
| 4 | 237 | 0.51 | 0.73 | 50 | empty |
| 5 | 239 | 0.51 | 0.73 | 51 | empty |
Interfaces
14 interfaces between chains.
- L–M · 271 Ų buried · 0 hydrogen bonds · protein-protein
- H–N · 270 Ų buried · 0 hydrogen bonds · protein-protein
- M–N · 269 Ų buried · 0 hydrogen bonds · protein-protein
- H–I · 269 Ų buried · 0 hydrogen bonds · protein-protein
- K–L · 268 Ų buried · 0 hydrogen bonds · protein-protein
Compared structures
- 3C9V · C7 Symmetrized Structure of Unliganded GroEL at 4.7 Angstrom Resolution from CryoEM · the same entry in another collection · chain E against E, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P0A6F5
- Elsewhere: RCSB PDB 3C9V · PDBe 3C9V · UniProt P0A6F5
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