MolNFT v1 · #59457 · protein
Crystal structure of B. subtilis levansucrase mutant E342A bound to raffinose
3BYN: “Crystal structure of B. subtilis levansucrase mutant E342A bound to raffinose”. X-ray diffraction, 4 ligands (FRU, GLC, GLA), 1 pocket (best druggability 0.59). MolNFT v1 #59457 on GenesisL1: 3D structure, binding sites and pockets…
- PDB
- 3BYN
- Type
- protein
- Length
- 440 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Levansucrase
- EC
- 2.4.1.10
- UniProt
- P05655
- Ligands
- FRU, GLC, GLA, CA
- Pockets
- 1 · best druggability 0.59
Structure
x-ray diffraction · 1 distinct chain · 16% helix, 40% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Levansucrase (EC 2.4.1.10) | protein | 440 | 16% helix, 40% strand | P05655 |
Ligands and binding sites
- FRU · beta-D-fructofuranose · sugar · chains A
- GLC · alpha-D-glucopyranose · sugar · chains A
- GLA · alpha-D-galactopyranose · sugar · chains A
- CA · Calcium ion · metal · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 264 | 0.59 | 0.79 | 30 | FRU, GLC, GLA |
Compared structures
- 3BYN · Crystal structure of B. subtilis levansucrase mutant E342A bound to raffinose · the same entry in another collection · chain A against A, TM-score 1.00
- P05655 · AlphaFold monomer V2.0 prediction for levansucrase (P05655) · a predicted model of the same protein · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P05655
- Elsewhere: RCSB PDB 3BYN · PDBe 3BYN · UniProt P05655
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