MolNFT v1 · #59349 · protein

Crystal structure of uncharacterized protein ISM_01780 from roseovarius nubinhibens ism

3BVC: “Crystal structure of uncharacterized protein ISM_01780 from roseovarius nubinhibens ism”. X-ray diffraction, 2 ligands (CA, NI), 6 pockets (best druggability 0.61). MolNFT v1 #59349 on GenesisL1: 3D structure, binding sites and…

PDB: 3BVC
Type: protein
Length: 406 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Uncharacterized protein ISM_01780
UniProt: A3SHZ8
Ligands: CA, NI
Pockets: 6 · best druggability 0.61

Structure

x-ray diffraction · 1 distinct chain · 28% helix, 27% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B	Uncharacterized protein ISM_01780	protein	203	28% helix, 27% strand	A3SHZ8

Ligands and binding sites

CA · Calcium ion · metal · 4 copies · chains A, B
NI · Nickel (II) ion · metal · 2 copies · chains A, B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

6 pockets found on a 1 Å grid, 4 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	121	0.61	0.86	29	NI
2	123	0.58	0.84	27	NI
3	172	0.52	0.78	21	empty
4	276	0.51	0.74	32	empty
5	129	0.48	0.79	19	empty

Interfaces

1 interface between chains.

A–B · 268 Å² buried · 0 hydrogen bonds · protein-protein

Compared structures

3BVC · Crystal structure of uncharacterized protein Ism_01780 from Roseovarius nubinhibens ISM · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt A3SHZ8
Elsewhere: RCSB PDB 3BVC · PDBe 3BVC · UniProt A3SHZ8

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