MolNFT v1 · #58764 · protein
Crystal structure of staphylococcal nuclease variant DELTA+PHS at cryogenic temperature
3BDC · Thermonuclease: “Crystal structure of staphylococcal nuclease variant DELTA+PHS at cryogenic temperature”. X-ray diffraction, 2 ligands (THP, CA), 1 pocket (best druggability 0.45). MolNFT v1 #58764 on GenesisL1: 3D structure…
- PDB
- 3BDC
- Type
- protein
- Length
- 129 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Thermonuclease
- EC
- 3.1.31.1
- UniProt
- P00644
- Ligands
- THP, CA
- Pockets
- 1 · best druggability 0.45
Structure
x-ray diffraction · 1 distinct chain · 29% helix, 33% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Thermonuclease (EC 3.1.31.1) | protein | 129 | 29% helix, 33% strand | P00644 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 91 | 0.45 | 0.80 | 15 | THP |
Compared structures
- 3BDC · Crystal structure of Staphylococcal nuclease variant Delta+PHS at cryogenic temperature · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P00644
- Elsewhere: RCSB PDB 3BDC · PDBe 3BDC · UniProt P00644
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