MolNFT v1 · #57980 · protein

Crystal structure of the galectin-8 N-terminal carbohydrate recognition domain in complex with lacto-N-fucopentaose III

3AP9: “Crystal structure of the galectin-8 N-terminal carbohydrate recognition domain in complex with…”. X-ray diffraction, 5 ligands (GAL, BGC, NAG). MolNFT v1 #57980 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 3AP9
Type: protein
Length: 151 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Galectin-8
UniProt: O00214
Ligands: GAL, BGC, NAG, FUC, CL

Structure

x-ray diffraction · 1 distinct chain · 2% helix, 58% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Galectin-8	protein	151	2% helix, 58% strand	O00214

Ligands and binding sites

GAL · beta-D-galactopyranose · sugar · 2 copies · chains A
BGC · beta-D-glucopyranose · sugar · chains A
NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · chains A
FUC · alpha-L-fucopyranose · sugar · chains A
CL · Chloride ion · ion · 3 copies · chains A
MPD · (4S)-2-methyl-2,4-pentanediol · additive · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

3AP9 · Crystal structure of the galectin-8 N-terminal carbohydrate recognition domain in complex… · the same entry in another collection · chain A against A, TM-score 1.00
O00214 · AlphaFold monomer V2.0 prediction for galectin-8 (O00214) · a predicted model of the same protein · chain A against A, TM-score 0.98

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt O00214
Elsewhere: RCSB PDB 3AP9 · PDBe 3AP9 · UniProt O00214

GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.