MolNFT v1 · #54899 · protein

Traptavidin, biotin bound form

2Y3F · Streptavidin: “Traptavidin, biotin bound form”. X-ray diffraction, 1 ligand (BTN), 1 pocket (best druggability 0.47). MolNFT v1 #54899 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 2Y3F
Type: protein
Length: 121 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Streptavidin
UniProt: P22629
Ligands: BTN
Pockets: 1 · best druggability 0.47

Structure

x-ray diffraction · 1 distinct chain · 5% helix, 55% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Streptavidin	protein	121	5% helix, 55% strand	P22629

Ligands and binding sites

BTN · Biotin · ligand · chains A
GOL · Glycerol · additive · 3 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	86	0.47	0.81	18	BTN

Compared structures

2Y3F · Traptavidin, biotin bound form · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P22629
Elsewhere: RCSB PDB 2Y3F · PDBe 2Y3F · UniProt P22629

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