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MolNFT v1 · #51832 · protein

Human notch-1 egfs 11-13

2VJ3 · Neurogenic locus notch homolog protein 1: “Human notch-1 egfs 11-13”. X-ray diffraction, 3 ligands (CA, NA, CL). MolNFT v1 #51832 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB
2VJ3
Type
protein
Length
120 residues
Chains
1
Method
x-ray diffraction
Collection
MolNFT v1 / PDB
Contract
0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner
0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule
Neurogenic locus notch homolog protein 1
UniProt
P46531
Ligands
CA, NA, CL

Structure

x-ray diffraction · 1 distinct chain · 0% helix, 30% strand (DSSP).

ChainMoleculeTypeResiduesSecondary structureUniProt
ANeurogenic locus notch homolog protein 1protein1200% helix, 30% strandP46531

Ligands and binding sites

  • CA · Calcium ion · metal · 4 copies · chains A
  • NA · Sodium ion · metal · 2 copies · chains A
  • CL · Chloride ion · ion · 2 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Modifications

Observed in the structure: 9 disulfide (disulfide).

Compared structures

  • 2VJ3 · Human Notch-1 EGFs 11-13 · the same entry in another collection · chain A against A, TM-score 1.00
  • P46531 · AlphaFold monomer V2.0 prediction for neurogenic locus notch homolog protein 1 (P46531) · a predicted model of the same protein · chain A against A, TM-score 0.69

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