MolNFT v1 · #50427 · protein
Crystal structure of the 3-mbt repeats from human L3MBTL1 bound to monomethyl-lysine
2RHY · LETHAL(3)MALIGNANT brain tumor-like protein: “Crystal structure of the 3-mbt repeats from human L3MBTL1 bound to monomethyl-lysine”. X-ray diffraction, 1 ligand (MLZ), 1 pocket (best druggability 0.70). MolNFT v1 #50427 on…
- PDB
- 2RHY
- Type
- protein
- Length
- 315 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- LETHAL(3)MALIGNANT brain tumor-like protein
- UniProt
- Q9Y468
- Ligands
- MLZ
- Pockets
- 1 · best druggability 0.70
Structure
x-ray diffraction · 1 distinct chain · 21% helix, 30% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | LETHAL(3)MALIGNANT brain tumor-like protein | protein | 315 | 21% helix, 30% strand | Q9Y468 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 732 | 0.70 | 0.77 | 56 | empty |
Modifications
Observed in the structure: 2 modified (nonstandard).
Compared structures
- 2RHY · Crystal structure of the 3-MBT repeats from human L3MBTL1 bound to monomethyl-lysine · the same entry in another collection · chain A against A, TM-score 1.00
- Q9Y468 · AlphaFold monomer V2.0 prediction for LETHAL(3)MALIGNANT brain tumor- like protein 1… · a predicted model of the same protein · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9Y468
- Elsewhere: RCSB PDB 2RHY · PDBe 2RHY · UniProt Q9Y468
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