MolNFT v1 · #50211 · protein

Crystal structure of staphylococcal nuclease variant DELTA+PHS I72K at cryogenic temperature

2RBM · Thermonuclease: “Crystal structure of staphylococcal nuclease variant DELTA+PHS I72K at cryogenic temperature”. X-ray diffraction, 3 ligands (THP, CA, PO4), 1 pocket (best druggability 0.46). MolNFT v1 #50211 on GenesisL1: 3D…

PDB: 2RBM
Type: protein
Length: 130 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Thermonuclease
EC: 3.1.31.1
UniProt: P00644
Ligands: THP, CA, PO4
Pockets: 1 · best druggability 0.46

Structure

x-ray diffraction · 1 distinct chain · 30% helix, 28% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Thermonuclease (EC 3.1.31.1)	protein	130	30% helix, 28% strand	P00644

Ligands and binding sites

THP · Thymidine-3',5'-diphosphate · ligand · chains A
CA · Calcium ion · metal · chains A
PO4 · Phosphate ion · ion · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	76	0.46	0.81	15	THP

Compared structures

2RBM · Crystal structure of Staphylococcal nuclease variant Delta+PHS I72K at cryogenic… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P00644
Elsewhere: RCSB PDB 2RBM · PDBe 2RBM · UniProt P00644

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