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MolNFT v1 · #49721 · protein

Crystal structure of disulfide-bond-crosslinked complex of bovine HSC70 (1-394AA)R171C and bovine auxilin (810-910AA)D876C in the ADP*PI form #2

2QWP · Heat shock cognate 71 kda protein: “Crystal structure of disulfide-bond-crosslinked complex of bovine HSC70 (1-394AA)R171C and bovine auxilin…”. X-ray diffraction, 4 ligands (ADP, NA, MG), 3 pockets (best druggability 0.77). MolNFT…

PDB
2QWP
Type
protein
Length
478 residues
Chains
2
Method
x-ray diffraction
Collection
MolNFT v1 / PDB
Contract
0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner
0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule
Heat shock cognate 71 kda protein; Putative tyrosine-protein phosphatase auxilin
EC
3.1.3.48
UniProt
P19120, Q27974
Ligands
ADP, NA, MG, PO4
Pockets
3 · best druggability 0.77

Structure

x-ray diffraction · 2 distinct chains · 45% helix, 23% strand (DSSP).

ChainMoleculeTypeResiduesSecondary structureUniProt
AHeat shock cognate 71 kda proteinprotein38640% helix, 28% strandP19120
BPutative tyrosine-protein phosphatase auxilin (EC 3.1.3.48)protein9268% helix, 0% strandQ27974

Ligands and binding sites

  • ADP · Adenosine-5'-diphosphate · ligand · chains A
  • NA · Sodium ion · metal · 2 copies · chains A
  • MG · Magnesium ion · metal · chains A
  • PO4 · Phosphate ion · ion · chains A
  • GOL · Glycerol · additive · 2 copies · chains A
  • ACY · Acetic acid · additive · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

3 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.

PocketVolume (ų)DruggabilityBuriednessLining residuesInside
16370.770.8375PO4, NA, MG, ADP, GOL
25060.680.7845empty
3820.320.7318empty

Interfaces

1 interface between chains.

  • A–B · 437 Ų buried · 2 hydrogen bonds · protein-protein

Modifications

Observed in the structure: 1 disulfide (disulfide).

Compared structures

  • 2QWP · Crystal structure of disulfide-bond-crosslinked complex of bovine hsc70 (1-394aa)R171C… · the same entry in another collection · chain A against A, TM-score 1.00
  • Q27974 · AlphaFold monomer V2.0 prediction for putative tyrosine-protein phosphatase auxilin… · a predicted model of the same protein · chain B against A, TM-score 0.97
  • P19120 · AlphaFold monomer V2.0 prediction for heat shock cognate 71 kda protein (P19120) · a predicted model of the same protein · chain A against A, TM-score 0.89

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