MolNFT v1 · #4939 · protein
Porcine pancreatic elastase complexed with (3S, 4S)N-para- toluenesulphonyl-3-ethyl-4-(carboxylic acid) pyrrolidin-2-one soaked in pH 9 buffer for one minute
1E34: “Porcine pancreatic elastase complexed with (3S, 4S)N-para- toluenesulphonyl-3-ethyl-4-(carboxylic acid)…”. X-ray diffraction, 3 ligands (TPX, CA, SO4), 1 pocket (best druggability 0.36). MolNFT v1 #4939 on GenesisL1: 3D structure…
- PDB
- 1E34
- Type
- protein
- Length
- 240 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Elastase
- EC
- 3.4.21.36
- UniProt
- P00772
- Ligands
- TPX, CA, SO4
- Pockets
- 1 · best druggability 0.36
Structure
x-ray diffraction · 1 distinct chain · 11% helix, 39% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| B | Elastase (EC 3.4.21.36) | protein | 240 | 11% helix, 39% strand | P00772 |
Ligands and binding sites
- TPX · (2S,3S)-3-formyl-2-({[(4-methylphenyl)sulfonyl]amino}methyl)pentanoic acid · ligand · chains B
- CA · Calcium ion · metal · chains B
- SO4 · Sulfate ion · ion · chains B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 80 | 0.36 | 0.76 | 20 | TPX |
Modifications
Observed in the structure: 4 disulfide, 1 covalent (disulfide, covalent ligand).
Compared structures
- 1E34 · Porcine pancreatic elastase complexed with (3S, 4S)N-para… · the same entry in another collection · chain B against B, TM-score 1.00
- P00772 · AlphaFold monomer V2.0 prediction for chymotrypsin-like elastase family member 1 (P00772) · a predicted model of the same protein · chain B against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P00772
- Elsewhere: RCSB PDB 1E34 · PDBe 1E34 · UniProt P00772
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