MolNFT v1 · #47971 · protein
Urate oxidase in complex with tris-dipicolinate lutetium
2PES · Uricase: “Urate oxidase in complex with tris-dipicolinate lutetium”. X-ray diffraction, 3 ligands (PDC, AZA, LU), 2 pockets (best druggability 0.55). MolNFT v1 #47971 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 2PES
- Type
- protein
- Length
- 295 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Uricase
- EC
- 1.7.3.3
- UniProt
- Q00511
- Ligands
- PDC, AZA, LU
- Pockets
- 2 · best druggability 0.55
Structure
x-ray diffraction · 1 distinct chain · 28% helix, 39% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Uricase (EC 1.7.3.3) | protein | 295 | 28% helix, 39% strand | Q00511 |
Ligands and binding sites
- PDC · Pyridine-2,6-dicarboxylic acid · ligand · 6 copies · chains A
- AZA · 8-azaxanthine · ligand · chains A
- LU · Lutetium (III) ion · metal · 3 copies
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 205 | 0.55 | 0.79 | 22 | empty |
| 2 | 178 | 0.47 | 0.75 | 21 | AZA |
Compared structures
- 2PES · Urate Oxidase in complex with tris-dipicolinate Lutetium · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q00511
- Elsewhere: RCSB PDB 2PES · PDBe 2PES · UniProt Q00511
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