MolNFT v1 · #47621 · protein
Crystal structure of dengue methyltransferase in complex with 7MEGPPPG2'OME and S-adenosyl-L-homocysteine
2P41 · Type II methyltransferase: “Crystal structure of dengue methyltransferase in complex with 7MEGPPPG2'OME and S-adenosyl-L-homocysteine”. X-ray diffraction, 3 ligands (G1G, SAH, SO4), 1 pocket (best druggability 0.64). MolNFT v1…
- PDB
- 2P41
- Type
- protein
- Length
- 259 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Type II methyltransferase
- EC
- 2.7.7.48
- UniProt
- Q9WLZ8
- Ligands
- G1G, SAH, SO4
- Pockets
- 1 · best druggability 0.64
Structure
x-ray diffraction · 1 distinct chain · 37% helix, 16% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Type II methyltransferase (EC 2.7.7.48) | protein | 259 | 37% helix, 16% strand | Q9WLZ8 |
Ligands and binding sites
- G1G · 7-methyl-guanosine-5'-triphosphate-5'-(2'-O-methyl)-guanosine · ligand · chains A
- SAH · S-adenosyl-L-homocysteine · ligand · chains A
- SO4 · Sulfate ion · ion · 7 copies · chains A
- GOL · Glycerol · additive · 3 copies · chains A
- CIT · Citric acid · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 453 | 0.64 | 0.77 | 44 | SO4, SAH |
Compared structures
- 2P41 · Crystal Structure of Dengue Methyltransferase in Complex with 7MeGpppG2'OMe and… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9WLZ8
- Elsewhere: RCSB PDB 2P41 · PDBe 2P41 · UniProt Q9WLZ8
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