MolNFT v1 · #46788 · protein

Cryogenic crystal structure of the staphylococcal nuclease variant truncated DELTA+PHS I92W

2OF1 · Staphylococcal thermonuclease: “Cryogenic crystal structure of the staphylococcal nuclease variant truncated DELTA+PHS I92W”. X-ray diffraction, 2 ligands (THP, CA), 1 pocket (best druggability 0.45). MolNFT v1 #46788 on GenesisL1…

PDB: 2OF1
Type: protein
Length: 136 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Staphylococcal thermonuclease
EC: 3.1.31.1
UniProt: P00644
Ligands: THP, CA
Pockets: 1 · best druggability 0.45

Structure

x-ray diffraction · 1 distinct chain · 26% helix, 29% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Staphylococcal thermonuclease (EC 3.1.31.1)	protein	136	26% helix, 29% strand	P00644

Ligands and binding sites

THP · Thymidine-3',5'-diphosphate · ligand · chains A
CA · Calcium ion · metal · chains A
DMS · Dimethyl sulfoxide · additive · 2 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	100	0.45	0.79	16	THP

Compared structures

2OF1 · Cryogenic crystal structure of the Staphylococcal Nuclease variant truncated Delta+PHS… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P00644
Elsewhere: RCSB PDB 2OF1 · PDBe 2OF1 · UniProt P00644

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