MolNFT v1 · #42253 · RNA
Solution structure and thermodynamics of 2',5' RNA intercalation
2KD4 · 5'-R(*GP*CP*CP*GP*CP*GP*GP*C)-2': “Solution structure and thermodynamics of 2',5' RNA intercalation”. Solution nmr, 1 ligand (PRL). MolNFT v1 #42253 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 2KD4
- Type
- RNA
- Length
- 16 nucleotides
- Chains
- 2
- Method
- solution nmr
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- 5'-R(*GP*CP*CP*GP*CP*GP*GP*C)-2'
- Ligands
- PRL
Structure
solution nmr · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | 5'-R(*GP*CP*CP*GP*CP*GP*GP*C)-2' | rna | 8 | — | — |
Ligands and binding sites
- PRL · Proflavin · ligand · 2 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Interfaces
1 interface between chains.
- A–B · 432 Ų buried · 40 hydrogen bonds · nucleic-nucleic
Compared structures
- 2KD4 · Solution structure and thermodynamics of 2',5' RNA intercalation · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 2KD4 · PDBe 2KD4
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