MolNFT v1 · #4215 · protein
Lectin from dioclea grandiflora complexed to trimannoside
1DGL: “Lectin from dioclea grandiflora complexed to trimannoside”. X-ray diffraction, 4 ligands (MAN, MMA, CA). MolNFT v1 #4215 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 1DGL
- Type
- protein
- Length
- 474 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Lectin
- UniProt
- P08902
- Ligands
- MAN, MMA, CA, MN
Structure
x-ray diffraction · 1 distinct chain · 4% helix, 46% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Lectin | protein | 237 | 4% helix, 46% strand | P08902 |
Ligands and binding sites
- MAN · alpha-D-mannopyranose · sugar · 4 copies · chains A, B
- MMA · methyl alpha-D-mannopyranoside · sugar · 2 copies · chains A, B
- CA · Calcium ion · metal · 2 copies · chains A, B
- MN · Manganese (II) ion · metal · 2 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Interfaces
1 interface between chains.
- A–B · 1115 Ų buried · 12 hydrogen bonds · protein-protein
Compared structures
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P08902
- Elsewhere: RCSB PDB 1DGL · PDBe 1DGL · UniProt P08902
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