MolNFT v1 · #40742 · protein
Structure of a streptococcus pneumoniae fucose binding module in complex with the blood group H-trisaccharide
2J1V · Fucolectin-related protein: “Structure of a streptococcus pneumoniae fucose binding module in complex with the blood group H-trisaccharide”. X-ray diffraction, 4 ligands (NAG, GAL, FUC), 1 pocket (best druggability 0.53). MolNFT v1…
- PDB
- 2J1V
- Type
- protein
- Length
- 277 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Fucolectin-related protein
- UniProt
- Q97N96
- Ligands
- NAG, GAL, FUC, CA
- Pockets
- 1 · best druggability 0.53
Structure
x-ray diffraction · 2 distinct chains · 8% helix, 44% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Fucolectin-related protein | protein | 141 | 8% helix, 45% strand | Q97N96 |
| B | Fucolectin-related protein | protein | 136 | 8% helix, 43% strand | Q97N96 |
Ligands and binding sites
- NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · chains A
- GAL · beta-D-galactopyranose · sugar · chains A
- FUC · alpha-L-fucopyranose · sugar · chains A
- CA · Calcium ion · metal · 2 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 170 | 0.53 | 0.79 | 32 | empty |
Interfaces
1 interface between chains.
- A–B · 515 Ų buried · 15 hydrogen bonds · protein-protein
Compared structures
- 2J1V · Structure of a Streptococcus pneumoniae fucose binding module in complex with the blood… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q97N96
- Elsewhere: RCSB PDB 2J1V · PDBe 2J1V · UniProt Q97N96
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.