MolNFT v1 · #38179 · protein
Docking motif interactions in the MAP kinase ERK2
2GPH · Mitogen-activated protein kinase 1: “Docking motif interactions in the MAP kinase ERK2”. X-ray diffraction, 3 pockets (best druggability 0.71). MolNFT v1 #38179 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 2GPH
- Type
- protein
- Length
- 361 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Mitogen-activated protein kinase 1; Tyrosine-protein phosphatase non-receptor type 7
- EC
- 2.7.11.24, 3.1.3.48
- UniProt
- P63086, P35236
- Pockets
- 3 · best druggability 0.71
Structure
x-ray diffraction · 2 distinct chains · 37% helix, 12% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Mitogen-activated protein kinase 1 (EC 2.7.11.24) | protein | 345 | 38% helix, 13% strand | P63086 |
| B | Tyrosine-protein phosphatase non-receptor type 7 (EC 3.1.3.48) | protein | 16 | 25% helix, 0% strand | P35236 |
Pockets
3 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 259 | 0.71 | 0.85 | 37 | empty |
| 2 | 137 | 0.57 | 0.83 | 30 | empty |
| 3 | 55 | 0.28 | 0.74 | 17 | empty |
Interfaces
1 interface between chains.
- A–B · 801 Ų buried · 18 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 1 disulfide (disulfide).
Compared structures
- 2GPH · Docking motif interactions in the MAP kinase ERK2 · the same entry in another collection · chain A against A, TM-score 1.00
- P63086 · AlphaFold monomer V2.0 prediction for mitogen-activated protein kinase 1 (P63086) · a predicted model of the same protein · chain A against A, TM-score 0.96
- P35236 · AlphaFold monomer V2.0 prediction for tyrosine-protein phosphatase non-receptor type 7… · a predicted model of the same protein · chain B against A, TM-score 0.37
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P63086
- Every structure of UniProt P35236
- Elsewhere: RCSB PDB 2GPH · PDBe 2GPH · UniProt P63086 · UniProt P35236
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