MolNFT v1 · #37283 · protein
Crystal structure of the C-terminal domain of the electron transfer catalyst dsbd (oxidized form)
2FWE · THIOL:DISULFIDE interchange protein dsbd: “Crystal structure of the C-terminal domain of the electron transfer catalyst dsbd (oxidized form)”. X-ray diffraction, 3 ligands (NI, NA, IOD). MolNFT v1 #37283 on GenesisL1: 3D structure…
- PDB
- 2FWE
- Type
- protein
- Length
- 122 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- THIOL:DISULFIDE interchange protein dsbd
- EC
- 1.8.1.8
- UniProt
- P36655
- Ligands
- NI, NA, IOD
Structure
x-ray diffraction · 1 distinct chain · 39% helix, 17% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | THIOL:DISULFIDE interchange protein dsbd (EC 1.8.1.8) | protein | 122 | 39% helix, 17% strand | P36655 |
Ligands and binding sites
- NI · Nickel (II) ion · metal · chains A
- NA · Sodium ion · metal · chains A
- IOD · Iodide ion · ion · 7 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Modifications
Observed in the structure: 1 disulfide (disulfide).
Compared structures
- 2FWE · crystal structure of the C-terminal domain of the electron transfer catalyst DsbD… · the same entry in another collection · chain A against A, TM-score 1.00
- P36655 · AlphaFold monomer V2.0 prediction for THIOL:DISULFIDE interchange protein dsbd (P36655) · a predicted model of the same protein · chain A against A, TM-score 0.95
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P36655
- Elsewhere: RCSB PDB 2FWE · PDBe 2FWE · UniProt P36655
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