MolNFT v1 · #36805 · protein
C-terminal half of gelsolin soaked in low calcium at pH 8
2FH3: “C-terminal half of gelsolin soaked in low calcium at pH 8”. X-ray diffraction, 1 ligand (CA), 13 pockets (best druggability 0.60). MolNFT v1 #36805 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 2FH3
- Type
- protein
- Length
- 967 residues
- Chains
- 3
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Gelsolin
- UniProt
- P06396
- Ligands
- CA
- Pockets
- 13 · best druggability 0.60
Structure
x-ray diffraction · 3 distinct chains · 23% helix, 29% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Gelsolin | protein | 321 | 22% helix, 31% strand | P06396 |
| B | Gelsolin | protein | 324 | 24% helix, 28% strand | P06396 |
| C | Gelsolin | protein | 322 | 23% helix, 29% strand | P06396 |
Ligands and binding sites
- CA · Calcium ion · metal · 9 copies · chains A, B, C
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
13 pockets found on a 1 Å grid, 7 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 216 | 0.60 | 0.81 | 32 | empty |
| 2 | 231 | 0.59 | 0.80 | 30 | empty |
| 3 | 180 | 0.59 | 0.82 | 35 | empty |
| 4 | 226 | 0.58 | 0.80 | 30 | empty |
| 5 | 175 | 0.58 | 0.81 | 25 | empty |
Interfaces
3 interfaces between chains.
- A–B · 335 Ų buried · 3 hydrogen bonds · protein-protein
- A–C · 126 Ų buried · 1 hydrogen bond · protein-protein
- B–C · 87 Ų buried · 0 hydrogen bonds · protein-protein
Compared structures
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P06396
- Elsewhere: RCSB PDB 2FH3 · PDBe 2FH3 · UniProt P06396
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