MolNFT v1 · #35414 · protein
Crystal structure of PDZ domain of KIAA0858 (lim), MS0793 from homo sapiens
2EAQ · Lim domain only protein 7: “Crystal structure of PDZ domain of KIAA0858 (lim), MS0793 from homo sapiens”. X-ray diffraction, 1 ligand (NI), 1 pocket (best druggability 0.31). MolNFT v1 #35414 on GenesisL1: 3D structure, binding…
- PDB
- 2EAQ
- Type
- protein
- Length
- 89 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Lim domain only protein 7
- UniProt
- Q8WWI1
- Ligands
- NI
- Pockets
- 1 · best druggability 0.31
Structure
x-ray diffraction · 1 distinct chain · 20% helix, 43% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Lim domain only protein 7 | protein | 89 | 20% helix, 43% strand | Q8WWI1 |
Ligands and binding sites
- NI · Nickel (II) ion · metal · 2 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 59 | 0.31 | 0.75 | 14 | empty |
Compared structures
- 2EAQ · Crystal structure of PDZ domain of KIAA0858 (LIM), MS0793 from Homo sapiens · the same entry in another collection · chain A against A, TM-score 1.00
- Q8WWI1 · AlphaFold monomer V2.0 prediction for lim domain only protein 7 (Q8WWI1) · a predicted model of the same protein · chain A against A, TM-score 0.92
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8WWI1
- Elsewhere: RCSB PDB 2EAQ · PDBe 2EAQ · UniProt Q8WWI1
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