MolNFT v1 · #35114 · protein

Structure of EEF2 in complex with a sordarin derivative

2E1R · Elongation factor 2: “Structure of EEF2 in complex with a sordarin derivative”. X-ray diffraction, 2 ligands (SOD, GDP), 8 pockets (best druggability 0.67). MolNFT v1 #35114 on GenesisL1: 3D structure, binding sites and pockets in…

PDB: 2E1R
Type: protein
Length: 828 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Elongation factor 2
UniProt: P32324
Ligands: SOD, GDP
Pockets: 8 · best druggability 0.67

Structure

x-ray diffraction · 1 distinct chain · 35% helix, 25% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Elongation factor 2	protein	828	35% helix, 25% strand	P32324

Ligands and binding sites

SOD · (1S,4S,5S,6R,9S,11S)-6-chloro-9-formyl-13-isopropyl-5-methyl-2-({[(3ar,5r,7r ,7AS)-7-methyl-3-methylenehexahydro-2H-furo[2,3-c]pyran-5-yl]oxy}methyl)tetr acyclo[7.4.0.02,11.04,8]tridec-12-ene-1-carboxylic aci · ligand · chains A
GDP · Guanosine-5'-diphosphate · ligand · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

8 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	501	0.67	0.78	52	empty
2	400	0.64	0.78	49	SOD
3	487	0.63	0.76	45	empty
4	148	0.49	0.78	27	empty
5	119	0.41	0.75	19	empty

Compared structures

2E1R · Structure of eEF2 in complex with a sordarin derivative · the same entry in another collection · chain A against A, TM-score 1.00
P32324 · AlphaFold monomer V2.0 prediction for elongation factor 2 (P32324) · a predicted model of the same protein · chain A against A, TM-score 0.62

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P32324
Elsewhere: RCSB PDB 2E1R · PDBe 2E1R · UniProt P32324

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