MolNFT v1 · #34823 · protein

Structure of the zbd in the orthorhomibic crystal from

2DS5 · ATP-dependent clp protease ATP-binding subunit clpx: “Structure of the zbd in the orthorhomibic crystal from”. X-ray diffraction, 2 ligands (ZN, CA). MolNFT v1 #34823 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 2DS5
Type: protein
Length: 87 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: ATP-dependent clp protease ATP-binding subunit clpx
UniProt: P0A6H1
Ligands: ZN, CA

Structure

x-ray diffraction · 2 distinct chains · 28% helix, 21% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	ATP-dependent clp protease ATP-binding subunit clpx	protein	43	28% helix, 19% strand	P0A6H1
B	ATP-dependent clp protease ATP-binding subunit clpx	protein	44	27% helix, 23% strand	P0A6H1

Ligands and binding sites

ZN · Zinc ion · metal · 2 copies · chains A, B
CA · Calcium ion · metal · chains B
PG4 · Tetraethylene glycol · additive · chains A, B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Interfaces

1 interface between chains.

A–B · 750 Å² buried · 5 hydrogen bonds · protein-protein

Compared structures

2DS5 · Structure of the ZBD in the orthorhomibic crystal from · the same entry in another collection · chain A against A, TM-score 1.00
P0A6H1 · AlphaFold monomer V2.0 prediction for ATP-dependent clp protease ATP- binding subunit… · a predicted model of the same protein · chain A against A, TM-score 0.89

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P0A6H1
Elsewhere: RCSB PDB 2DS5 · PDBe 2DS5 · UniProt P0A6H1

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