MolNFT v1 · #33835 · protein

Native crystal structure of no releasing inductive lectin from seeds of the canavalia maritima (conm)

2CWM: “Native crystal structure of no releasing inductive lectin from seeds of the canavalia maritima (conm)”. X-ray diffraction, 2 ligands (CA, MN), 2 pockets (best druggability 0.44). MolNFT v1 #33835 on GenesisL1: 3D structure, binding…

PDB: 2CWM
Type: protein
Length: 474 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Lectin
UniProt: P81364
Ligands: CA, MN
Pockets: 2 · best druggability 0.44

Structure

x-ray diffraction · 1 distinct chain · 4% helix, 46% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, D	Lectin	protein	237	4% helix, 46% strand	P81364

Ligands and binding sites

CA · Calcium ion · metal · 2 copies · chains A, D
MN · Manganese (II) ion · metal · 2 copies · chains A, D

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	65	0.44	0.83	18	empty
2	77	0.39	0.79	22	empty

Interfaces

1 interface between chains.

A–D · 1081 Å² buried · 23 hydrogen bonds · protein-protein

Compared structures

2CWM · Native Crystal Structure of NO releasing inductive lectin from seeds of the Canavalia… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P81364
Elsewhere: RCSB PDB 2CWM · PDBe 2CWM · UniProt P81364

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