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Native crystal structure of no releasing inductive lectin from seeds of the canavalia maritima (conm)

Analyse Native crystal structure of no releasing inductive lectin from seeds of the… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 2CWM
Type: protein
Length: 474 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Lectin
UniProt: P81364
Ligands: CA, MN
Pockets: 2 · best druggability 0.44

Structure

x-ray diffraction · 1 distinct chain · 4% helix, 46% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, D	Lectin	protein	237	4% helix, 46% strand	P81364

Ligands and binding sites

CA · Calcium ion · metal · 2 copies · chains A, D
MN · Manganese (II) ion · metal · 2 copies · chains A, D

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	65	0.44	0.83	18	empty
2	77	0.39	0.79	22	empty

Interfaces

1 interface between chains.

A–D · 1081 Å² buried · 23 hydrogen bonds · protein-protein

Compared structures

2CWM · Native Crystal Structure of NO releasing inductive lectin from seeds of the Canavalia… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P81364
Elsewhere: RCSB PDB 2CWM · PDBe 2CWM · UniProt P81364

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