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MolNFT v1 · #32701 · protein

Is radiation damage dependent on the dose-rate used during macromolecular crystallography data collection

2BY9 · Cationic trypsin: “Is radiation damage dependent on the dose-rate used during macromolecular crystallography data collection”. X-ray diffraction, 3 ligands (BEN, CA, SO4). MolNFT v1 #32701 on GenesisL1: 3D structure, binding sites…

PDB
2BY9
Type
protein
Length
223 residues
Chains
1
Method
x-ray diffraction
Collection
MolNFT v1 / PDB
Contract
0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner
0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule
Cationic trypsin
EC
3.4.21.4
UniProt
P00760
Ligands
BEN, CA, SO4

Structure

x-ray diffraction · 1 distinct chain · 11% helix, 36% strand (DSSP).

ChainMoleculeTypeResiduesSecondary structureUniProt
XCationic trypsin (EC 3.4.21.4)protein22311% helix, 36% strandP00760

Ligands and binding sites

  • BEN · Benzamidine · ligand · chains X
  • CA · Calcium ion · metal · chains X
  • SO4 · Sulfate ion · ion · 2 copies · chains X
  • GOL · Glycerol · additive · chains X

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Modifications

Observed in the structure: 6 disulfide (disulfide).

Compared structures

  • 2BY9 · Is radiation damage dependent on the dose-rate used during macromolecular crystallography… · the same entry in another collection · chain X against X, TM-score 1.00
  • 1TNK · Prediction of novel serine protease inhibitors · a predicted model of the same protein · chain X against A, TM-score 1.00
  • 1TNL · Prediction of novel serine protease inhibitors · a predicted model of the same protein · chain X against A, TM-score 1.00
  • 1TNJ · Prediction of novel serine protease inhibitors · a predicted model of the same protein · chain X against A, TM-score 1.00
  • 1TNH · Prediction of novel serine protease inhibitors · a predicted model of the same protein · chain X against A, TM-score 1.00
  • 1TNG · Prediction of novel serine protease inhibitors · a predicted model of the same protein · chain X against A, TM-score 1.00
  • 1TNI · Prediction of novel serine protease inhibitors · a predicted model of the same protein · chain X against A, TM-score 1.00

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