MolNFT v1 · #3020 · protein
Chloroquine binds in the cofactor binding site of plasmodium falciparum lactate dehydrogenase.
1CEQ · Protein (L-lactate dehydrogenase): “Chloroquine binds in the cofactor binding site of plasmodium falciparum lactate dehydrogenase.”. X-ray diffraction, 3 pockets (best druggability 0.66). MolNFT v1 #3020 on GenesisL1: 3D structure…
- PDB
- 1CEQ
- Type
- protein
- Length
- 304 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Protein (L-lactate dehydrogenase)
- EC
- 1.1.1.27
- UniProt
- Q27743
- Pockets
- 3 · best druggability 0.66
Structure
x-ray diffraction · 1 distinct chain · 51% helix, 21% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Protein (L-lactate dehydrogenase) (EC 1.1.1.27) | protein | 304 | 51% helix, 21% strand | Q27743 |
Pockets
3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 465 | 0.66 | 0.78 | 57 | empty |
| 2 | 125 | 0.43 | 0.76 | 21 | empty |
| 3 | 76 | 0.29 | 0.72 | 16 | empty |
Compared structures
- 1CEQ · Chloroquine binds in the cofactor binding site of plasmodium falciparum lactate… · the same entry in another collection · chain A against A, TM-score 1.00
- Q27743 · AlphaFold monomer V2.0 prediction for L-lactate dehydrogenase (Q27743) · a predicted model of the same protein · chain A against A, TM-score 0.98
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q27743
- Elsewhere: RCSB PDB 1CEQ · PDBe 1CEQ · UniProt Q27743
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