MolNFT v1 · #27193 · protein
Crystal structure of human rhoa in complex with DH/PH fragment of pdzrhogef
1XCG · Rho guanine nucleotide exchange factor 11: “Crystal structure of human rhoa in complex with DH/PH fragment of pdzrhogef”. X-ray diffraction, 12 pockets (best druggability 0.73). MolNFT v1 #27193 on GenesisL1: 3D structure, binding…
- PDB
- 1XCG
- Type
- protein
- Length
- 1,069 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Rho guanine nucleotide exchange factor 11; Transforming protein rhoa
- UniProt
- O15085, P61586
- Pockets
- 12 · best druggability 0.73
Structure
x-ray diffraction · 3 distinct chains · 54% helix, 16% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Rho guanine nucleotide exchange factor 11 | protein | 355 | 59% helix, 13% strand | O15085 |
| B, F | Transforming protein rhoa | protein | 178 | 38% helix, 22% strand | P61586 |
| E | Rho guanine nucleotide exchange factor 11 | protein | 358 | 58% helix, 15% strand | O15085 |
Pockets
12 pockets found on a 1 Å grid, 7 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 73 | 0.73 | 0.98 | 21 | empty |
| 2 | 785 | 0.73 | 0.78 | 73 | empty |
| 3 | 67 | 0.71 | 0.97 | 20 | empty |
| 4 | 642 | 0.70 | 0.78 | 52 | empty |
| 5 | 337 | 0.57 | 0.76 | 29 | empty |
Interfaces
3 interfaces between chains.
- A–B · 1708 Ų buried · 26 hydrogen bonds · protein-protein
- E–F · 1620 Ų buried · 28 hydrogen bonds · protein-protein
- A–E · 727 Ų buried · 4 hydrogen bonds · protein-protein
Compared structures
- 1XCG · Crystal Structure of Human RhoA in complex with DH/PH fragment of PDZRHOGEF · the same entry in another collection · chain A against A, TM-score 1.00
- O15085 · AlphaFold monomer V2.0 prediction for rho guanine nucleotide exchange factor 11 (O15085) · a predicted model of the same protein · chain A against A, TM-score 0.95
- P61586 · AlphaFold monomer V2.0 prediction for transforming protein rhoa (P61586) · a predicted model of the same protein · chain B against A, TM-score 0.94
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt O15085
- Every structure of UniProt P61586
- Elsewhere: RCSB PDB 1XCG · PDBe 1XCG · UniProt O15085 · UniProt P61586
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