MolNFT v1 · #25177 · protein

Crystal structure of a putative phosphoesterase

1VHU · Hypothetical protein AF1521: “Crystal structure of a putative phosphoesterase”. X-ray diffraction, 1 pocket (best druggability 0.53). MolNFT v1 #25177 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 1VHU
Type: protein
Length: 192 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Hypothetical protein AF1521
UniProt: O28751
Pockets: 1 · best druggability 0.53

Structure

x-ray diffraction · 1 distinct chain · 44% helix, 21% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Hypothetical protein AF1521	protein	192	44% helix, 21% strand	O28751

Ligands and binding sites

MES · 2-(N-morpholino)-ethanesulfonic acid · additive · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	178	0.53	0.79	33	MES

Modifications

Observed in the structure: 5 modified, 1 disulfide (engineered, disulfide).

Compared structures

1VHU · Crystal structure of a putative phosphoesterase · the same entry in another collection · chain A against A, TM-score 1.00
O28751 · AlphaFold monomer V2.0 prediction for ADP-ribose glycohydrolase AF_1521 (O28751) · a predicted model of the same protein · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt O28751
Elsewhere: RCSB PDB 1VHU · PDBe 1VHU · UniProt O28751

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