MolNFT v1 · #23129 · protein
Golgi alpha-mannosidase II in complex with salacinol
1TQS: “Golgi alpha-mannosidase II in complex with salacinol”. X-ray diffraction, 3 ligands (SSO, NAG, ZN), 12 pockets (best druggability 0.81). MolNFT v1 #23129 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 1TQS
- Type
- protein
- Length
- 1,014 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Alpha-mannosidase II
- EC
- 3.2.1.114
- UniProt
- Q24451
- Ligands
- SSO, NAG, ZN
- Pockets
- 12 · best druggability 0.81
Structure
x-ray diffraction · 1 distinct chain · 24% helix, 30% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Alpha-mannosidase II (EC 3.2.1.114) | protein | 1014 | 24% helix, 30% strand | Q24451 |
Ligands and binding sites
- SSO · 1,4-dideoxy-1,4-[[2S,3S)-2,4-dihydroxy-3-(sulfoxy)butyl]episulfoniumylidene]-D-arabinitol inner salt · ligand · chains A
- NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · chains A
- ZN · Zinc ion · metal · chains A
- MRD · (4R)-2-methylpentane-2,4-diol · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
12 pockets found on a 1 Å grid, 5 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 136 | 0.81 | 0.98 | 30 | empty |
| 2 | 265 | 0.75 | 0.89 | 38 | empty |
| 3 | 671 | 0.73 | 0.79 | 98 | empty |
| 4 | 284 | 0.65 | 0.81 | 33 | empty |
| 5 | 217 | 0.51 | 0.76 | 33 | SSO |
Modifications
Observed in the structure: 5 disulfide, 1 glycan (disulfide, N-glycosylation).
Compared structures
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q24451
- Elsewhere: RCSB PDB 1TQS · PDBe 1TQS · UniProt Q24451
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.