MolNFT v1 · #23076 · protein
Crystal structure of PDZ3 domain of psd-95 protein complexed with a peptide ligand kketwv
1TP5 · Presynaptic density protein 95: “Crystal structure of PDZ3 domain of psd-95 protein complexed with a peptide ligand kketwv”. X-ray diffraction. MolNFT v1 #23076 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 1TP5
- Type
- protein
- Length
- 121 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Presynaptic density protein 95; Lys-lys-glu-thr-TRP-val peptide ligand
- UniProt
- P31016
Structure
x-ray diffraction · 2 distinct chains · 21% helix, 34% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Presynaptic density protein 95 | protein | 115 | 22% helix, 34% strand | P31016 |
| B | Lys-lys-glu-thr-TRP-val peptide ligand | protein | 6 | 0% helix, 33% strand | — |
Interfaces
1 interface between chains.
- A–B · 501 Ų buried · 15 hydrogen bonds · protein-protein
Compared structures
- 1TP5 · Crystal structure of PDZ3 domain of PSD-95 protein complexed with a peptide ligand KKETWV · the same entry in another collection · chain A against A, TM-score 1.00
- P31016 · AlphaFold monomer V2.0 prediction for disks large homolog 4 (P31016) · a predicted model of the same protein · chain A against A, TM-score 0.84
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P31016
- Elsewhere: RCSB PDB 1TP5 · PDBe 1TP5 · UniProt P31016
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