MolNFT v1 · #21954 · protein
Structure of [R563A] leukotriene A4 hydrolase
1SQM · Leukotriene a-4 hydrolase: “Structure of [R563A] leukotriene A4 hydrolase”. X-ray diffraction, 2 ligands (ZN, YB), 8 pockets (best druggability 0.84). MolNFT v1 #21954 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 1SQM
- Type
- protein
- Length
- 610 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Leukotriene a-4 hydrolase
- EC
- 3.3.2.6
- UniProt
- P09960
- Ligands
- ZN, YB
- Pockets
- 8 · best druggability 0.84
Structure
x-ray diffraction · 1 distinct chain · 43% helix, 23% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Leukotriene a-4 hydrolase (EC 3.3.2.6) | protein | 610 | 43% helix, 23% strand | P09960 |
Ligands and binding sites
- ZN · Zinc ion · metal · chains A
- YB · Ytterbium (III) ion · metal · chains A
- IMD · Imidazole · additive · chains A
- ACY · Acetic acid · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
8 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 959 | 0.84 | 0.85 | 70 | IMD, ACY |
| 2 | 91 | 0.77 | 0.97 | 24 | empty |
| 3 | 192 | 0.51 | 0.77 | 26 | empty |
| 4 | 83 | 0.48 | 0.82 | 17 | empty |
| 5 | 73 | 0.36 | 0.77 | 16 | empty |
Compared structures
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P09960
- Elsewhere: RCSB PDB 1SQM · PDBe 1SQM · UniProt P09960
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