MolNFT v1 · #21465 · protein

Soybean agglutinin complexed with 2,4-pentasaccharide

1SBD: “Soybean agglutinin complexed with 2,4-pentasaccharide”. X-ray diffraction, 4 ligands (NAG, GAL, MN). MolNFT v1 #21465 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 1SBD
Type: protein
Length: 232 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Soybean agglutinin
UniProt: P05046
Ligands: NAG, GAL, MN, CA

Structure

x-ray diffraction · 1 distinct chain · 4% helix, 47% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Soybean agglutinin	protein	232	4% helix, 47% strand	P05046

Ligands and binding sites

NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · chains A
GAL · beta-D-galactopyranose · sugar · chains A
MN · Manganese (II) ion · metal · chains A
CA · Calcium ion · metal · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

1SBD · Soybean agglutinin complexed with 2,4-pentasaccharide · the same entry in another collection · chain A against A, TM-score 1.00
P05046 · AlphaFold monomer V2.0 prediction for lectin (P05046) · a predicted model of the same protein · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P05046
Elsewhere: RCSB PDB 1SBD · PDBe 1SBD · UniProt P05046

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