MolNFT v1 · #21390 · protein
Crystal structure of MRE11-3
1S8E · Exonuclease putative: “Crystal structure of MRE11-3”. X-ray diffraction, 1 ligand (MN), 6 pockets (best druggability 0.51). MolNFT v1 #21390 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 1S8E
- Type
- protein
- Length
- 666 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Exonuclease putative
- UniProt
- Q8U1N9
- Ligands
- MN
- Pockets
- 6 · best druggability 0.51
Structure
x-ray diffraction · 1 distinct chain · 23% helix, 33% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Exonuclease putative | protein | 333 | 23% helix, 33% strand | Q8U1N9 |
Ligands and binding sites
- MN · Manganese (II) ion · metal · 4 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
6 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 222 | 0.51 | 0.76 | 25 | empty |
| 2 | 201 | 0.50 | 0.77 | 24 | empty |
| 3 | 119 | 0.45 | 0.78 | 13 | empty |
| 4 | 78 | 0.34 | 0.75 | 19 | empty |
| 5 | 76 | 0.34 | 0.75 | 16 | empty |
Interfaces
1 interface between chains.
- A–B · 659 Ų buried · 4 hydrogen bonds · protein-protein
Compared structures
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8U1N9
- Elsewhere: RCSB PDB 1S8E · PDBe 1S8E · UniProt Q8U1N9
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