MolNFT v1 · #19630 · protein
Crystal structure of backbone modified pna hexamer
1QPY · Peptide nucleic acid 5'-(*CP1*GPN*TP1*APN*CP1*GPN*LYS)-3': “Crystal structure of backbone modified pna hexamer”. X-ray diffraction, 4 ligands (CP1, GPN, TP1). MolNFT v1 #19630 on GenesisL1: 3D structure, binding sites and pockets in…
- PDB
- 1QPY
- Type
- protein
- Length
- 8 residues
- Chains
- 8
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Peptide nucleic acid 5'-(*CP1*GPN*TP1*APN*CP1*GPN*LYS)-3'
- Ligands
- CP1, GPN, TP1, APN
Structure
x-ray diffraction · 1 distinct chain · 0% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, C, D, E, F, G, H | Peptide nucleic acid 5'-(*CP1*GPN*TP1*APN*CP1*GPN*LYS)-3' | protein | 1 | 0% helix, 0% strand | — |
Ligands and binding sites
- CP1 · 2-(methylamino)-ethylglycine-carbonylmethylene-cytosine · ligand · 16 copies · chains C, B, G, F
- GPN · 2-aminoethylglycine-carbonylmethylene-guanine · ligand · 16 copies · chains A, B, C, D, E, F, G, H
- TP1 · 2-(methylamino)-ethylglycine-carbonylmethylene-thymine · ligand · 8 copies
- APN · 2-aminoethylglycine-carbonylmethylene-adenine · ligand · 8 copies
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Modifications
Observed in the structure: 8 covalent (covalent ligand).
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 1QPY · PDBe 1QPY
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