MolNFT v1 · #191397 · protein
Hmgcr-UBIAD1 complex state 2
8DJK: “Hmgcr-UBIAD1 complex state 2”. Electron microscopy, 2 ligands (Y01, AJP). MolNFT v1 #191397 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 8DJK
- Type
- protein
- Length
- 870 residues
- Chains
- 5
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- P00347, G3IEF0, P0ABE7
- Ligands
- Y01, AJP
Structure
electron microscopy · 5 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 245 | — | P00347 |
| B | — | protein | 281 | — | G3IEF0 |
| C | — | protein | 120 | — | P0ABE7 |
| L | — | protein | 106 | — | — |
| H | — | protein | 118 | — | — |
Ligands and binding sites
- Y01 · Cholesterol hemisuccinate · ligand · 6 copies · chains A, B
- AJP · Digitonin · ligand · 2 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 8DJK · HMGCR-UBIAD1 Complex State 2 · the same entry in another collection · chain B against B, TM-score 1.00
- P00347 · AlphaFold monomer V2.0 prediction for 3-hydroxy-3-methylglutaryl- coenzyme a reductase… · a predicted model of the same protein · chain A against A, TM-score 0.86
- P0ABE7 · AlphaFold monomer V2.0 prediction for soluble cytochrome B562 (P0ABE7) · a predicted model of the same protein · chain C against A, TM-score 0.81
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P00347
- Every structure of UniProt G3IEF0
- Every structure of UniProt P0ABE7
- Elsewhere: RCSB PDB 8DJK · PDBe 8DJK · UniProt P00347 · UniProt G3IEF0 · UniProt P0ABE7
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